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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023524583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 507aa MW: 56948.5 Da PI: 6.5029 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 57.6 | 3.6e-18 | 27 | 82 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 l++lpe++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+ae+a++++e XP_023524583.1 27 SLEDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAE 82 58999***********************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence |
MPVSLRFGHW LARFSGHSNI RQKHGMSLED LPESQRADAV SSLVYEASAR IRDPVYGCAG 60 AICHLQKQIN ELQAEVAKTH AELVNMQCHQ ANLVALICKE LTQTPAPTPP PPDHCSLDNN 120 FSSATPQSYP LFDDSNIWEV RWVQTELAVE VYPLRLQLLE VPKGDRSTMR ISKKETIGEL 180 HRRACEIFDL NLEQVCIWDY YGHRKHALMN DMDKTLDDAN LQMDQDILVE IINHGNNNAS 240 DGCASYVQDN GTADKEATSI SLEPSKSNLN VAGGMSNKGM SKTEVVQSQN QTSSIRELDN 300 ASGHTGVSTR GSSCGLTGLL NLGNTCFMNS AIQCLVHTPE FARYFREDYH QEINWQNPLG 360 MVGELAMAFG DLLRKLWAPG RTSVAPRPFK AKLARFAPQF SGYNQHDSQE LLAFLLDGLH 420 EDLNRVKHKP YIKSRDADGR PDEEVADEYW ANHIARNDSI IVDVCQVCKI TYFHCKLMVR 480 NKLCKVFKIK GMTLWHASFF EVWALAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-28 | LBD family protein |