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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023523671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 329aa MW: 36172.8 Da PI: 8.4911 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.4 | 1.1e-39 | 50 | 126 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023523671.1 50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 126 **************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence |
MYLRLRGIGN MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR 120 RRKPQPATMT LNAGRFLYGN QGPRFLPFGN QLLSASNDVS SSWIGMIKPE SNAPLCSGNS 180 QFDFGDRRKS MLLPGSLACD YKEKQLAISC IPIGLLPKSS DAHPFLDVES SNGENVQKVF 240 GNGSDQFFNS DCALSLLSTP VEPGEINLSS MSQSNLITPA HFIHSDGLGL ESDPVNSGMV 300 SDGSSHGNIR CYPTFQDGLA GSSVDLFRY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 123 | RKRSCRKRLDGHNRRRRK |
2 | 106 | 124 | RKRSCRKRLDGHNRRRRKP |
3 | 107 | 125 | RKRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-46 | SBP family protein |