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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023521381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 25851.9 Da PI: 6.9392 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.6 | 2.4e-39 | 40 | 141 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f+++q ++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael XP_023521381.1 40 PCGACKFLRRKCVNGCIFAPHFASDQgVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 134 7*************************77******************************************************************* PP DUF260 95 allkeel 101 a+++++l XP_023521381.1 135 AAVQSQL 141 ***9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MADADHQFPR RKDLGKRTSS AANTDTTSTT PTDIGAATAP CGACKFLRRK CVNGCIFAPH 60 FASDQGVARF AAVHKVFGAS NVSKLLLHIP LSRRNDAVVT ISYEAQARLS DPVYGCVSTV 120 LALQQQVASL QAELAAVQSQ LISSRLAFAS AIQNSQPPQV GVQMQPAYSN NSSISVSAST 180 SAHNAINLSS FASNYDLPAE TAPSPHHLEP LHLPRRSIED EEDEENSQLP TIFADDLLRP 240 R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-51 | LBD family protein |