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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023519463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41385.8 Da PI: 6.0621 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.5e-22 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ rqvtfskR+ngi+KKA+EL +LCd+++ +++fs+tgk XP_023519463.1 10 KLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGK 53 5688999************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence |
MGRVKLKIKK LESTGSRQVT FSKRKNGIMK KAKELAILCD IDIVLLMFSP TGKPTLYQGE 60 RSSIEEVITK FAELTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDFEELINE 120 VTVLRDQIGE AHKRLSYWRN PDSISNIQQL QQMEGLIRES LNQTRLHKEN LRRHQLLSQE 180 FTGQYPGGEM SLPLLMDEMQ GIQPLLWLPN YGTQQITLQN EPNFLQPGDV ECSFPSYPSY 240 YNPGKQIEAG VSGQVDSMPQ GDGGLNELSG TSCSTLQLGE QYQYPPTCDG SSFQDEKRLN 300 LEMEMNLHGN YVDNQLNGKL DLSRSLYDDE QHPWGSIPGP CSIPMYQSSN AYHHHVGSLL 360 TAPSKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-92 | M-type_MADS family protein |