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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023519112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19945 Da PI: 5.5473 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63 | 3.4e-20 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ rqvtfskRrng++KKA+ L +LC+ e+a+i+fs+ gk + + XP_023519112.1 11 VKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSF 57 677889************************************98766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence |
MGRRKIEMKM VKDRGSRQVT FSKRRNGLFK KANDLATLCG LEIAIIVFSP GGKAFSFGNP 60 NVEDVVDRYL NRKSEPIPPA SEGMFEKENE ELIDLVKQLQ LEKKKGEMLE KEMKSRGESI 120 KIEDLDLDEL LKLKESLESL RQNVRMKESE LEASSSLLLL ANEPVVEADA SASKTSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-31 | M-type_MADS family protein |