PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023516854.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NF-YC

Protein Properties

Length: 220aa MW: 24211.4 Da PI: 4.848

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023516854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.1	8.3e-56	34	138	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_023516854.1 34 QLQMFWSFQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 128 89**9887789****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_023516854.1 129 VDIVPRDEIK 138 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MESNNQAQSS PYPPPQAPVP APPLHHLLQQ QQQQLQMFWS FQRQEIEQVN DFKNHQLPLA 60 RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL QKNDIAAAIT 120 RTDIFDFLVD IVPRDEIKDE AGLGGMVGAT ASGVPYYYPP MGQPAGPPGG MMIGRPAMDP 180 TGVYAQPPSQ AWQSVWQPAA EDGSYASGGS SGQGNLDGQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-87	NF-YC family protein