PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023515475.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 298aa MW: 33321.4 Da PI: 9.4138

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023515475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2e-28	61	164	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl++eA+ r+ +P+ G++g+++++++ql+q XP_023515475.1 61 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQD 155 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_023515475.1 156 AVEAVLNGA 164 *99988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MRTRSRQQTL PQWVTKPESH QNWKTISAHQ YKNKTHPRFL PHYDTTFFLF FAIQSSAMRM 60 SCNGCRVLRK GCSESCSIRP CLQWIKTPQS QANATFFLAK FYGRAGLLNL INAGPDHLRP 120 AIFKSLLFEA CGRIVNPIFG SAGLLWSGSW QLCQDAVEAV LNGAPIPPVS YEMATSHMGP 180 PLKGCDIRHV SKQQDSGLSE IKKRRRFKRK PKPKEEPVML PEFVVDGPTR ISSEPRCFKF 240 ELDNLAGHVS PEKVCGSEHT ECLSVETAEA SSVGQGGGVE LELTLGFGHG RMLTCKER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	209	KKRRRFKR
2	204	210	RRRFKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-79	LBD family protein