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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023515354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19833.5 Da PI: 6.2161 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.8 | 7.7e-38 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyfp++ +++f +vhk+FGasn +kll++lp ++r+ a+ ++ yeA+ar++dP+yG+++ i++lq+q+ +l+a++ XP_023515354.1 11 PCGACKFLRRKCVNGCIFAPYFPHDLgASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQV 105 7************************989******************************************************************* PP DUF260 95 allkee 100 a+l+e+ XP_023515354.1 106 AYLREQ 111 *99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MAASSSSSSP PCGACKFLRR KCVNGCIFAP YFPHDLGASH FSAVHKVFGA SNASKLLAHL 60 PVSHRSLAAV TISYEAQARL QDPIYGCISQ IFALQHQVVN LRAQVAYLRE QAAQIILNGY 120 ITRNPNELLY GNSLSYSDEE LLDLQTWLLE ESCSTAAPEF EPTAGPYVQM GVADSNLAGD 180 FCC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-58 | LBD family protein |