PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023513762.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 296aa MW: 32892.8 Da PI: 8.3039

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023513762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.9	1.7e-39	42	118	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023513762.1 42 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 118 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MGEGSMDDME GTRVTLIESS SSSSRLTKRS RTPYNGPQVP SCMVDGCSSD LSKCRDYHRR 60 HKVCEFHSKT PKVTICGREQ RFCQQCSRFH SLVEFDDRKR SCRKRLDGHN RRRRKPQPAT 120 IMLNAGRFLY SNQGPRFLPF GNQLLSASND LSSSWVGTIK PEHNDALCSS NSQLDDADRR 180 KSMFPGLSGC DYKEKQPPFL NVGSNNVGNV QKVMGNGCAL SLLSTPVEAG EINNLTSMVQ 240 SNLIPSSHFI HNDGLGFESD LVSPRLASDG SSDANIRCYS MFEDGPDGSS IDLFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	115	RKRSCRKRLDGHNRRRRK
2	98	116	RKRSCRKRLDGHNRRRRKP
3	99	117	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-46	SBP family protein