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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023513760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 306aa MW: 34090.3 Da PI: 8.5529 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.8 | 1.8e-39 | 52 | 128 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023513760.1 52 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 128 **************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MYLRLRGIGH MGEGSMDDME GTRVTLIESS SSSSRLTKRS RTPYNGPQVP SCMVDGCSSD 60 LSKCRDYHRR HKVCEFHSKT PKVTICGREQ RFCQQCSRFH SLVEFDDRKR SCRKRLDGHN 120 RRRRKPQPAT IMLNAGRFLY SNQGPRFLPF GNQLLSASND LSSSWVGTIK PEHNDALCSS 180 NSQLDDADRR KSMFPGLSGC DYKEKQPPFL NVGSNNVGNV QKVMGNGCAL SLLSTPVEAG 240 EINNLTSMVQ SNLIPSSHFI HNDGLGFESD LVSPRLASDG SSDANIRCYS MFEDGPDGSS 300 IDLFRF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 125 | RKRSCRKRLDGHNRRRRK |
2 | 108 | 126 | RKRSCRKRLDGHNRRRRKP |
3 | 109 | 127 | RKRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-45 | SBP family protein |