PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023513250.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family M-type_MADS
Protein Properties Length: 294aa    MW: 32934.6 Da    PI: 8.2418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023513250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.5e-221461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++ KA ELSvLC+ae+a+++ s t+kly++
  XP_023513250.1 14 KLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSATNKLYTF 61
                    57899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MKKSLGRRKI EIKKLEKKSS QQVTFSKRRA GLFNKAAELS VLCGAEIAIL VSSATNKLYT  60
FGHPNVESLL DRFLTGNSAP PKPAEAYLPL QELNRDFDDV AAEFDIEKRR AAERSSNDRF  120
WWDEPLESMK IDELKRFRSS LVELRGKVAE RVEKFTDMRT EGSPIPALQP STPPSITLVG  180
NLQPPPTTPS IDLVENLQQP PTPPSIGLVE NLQRPPTPPS IGFFENLQWP STPPSIGLFE  240
NLRWPSTPPS IDLVKSLHWS PMPSIHLAEN DQCLPSSFHI SGNHSVARRL NMLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-28M-type_MADS family protein