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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 151aa MW: 17119.8 Da PI: 8.7514 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.1 | 1.5e-43 | 21 | 121 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+kdC++apyfp ++p kfa+vhk+FGasnv+k+l++++ ++r d++ss+vyeA+ar+rdPvyG+vg+i+ lq++++qlk +la XP_023512989.1 21 PCASCKLLRRRCTKDCIFAPYFPPNDPLKFAIVHKIFGASNVSKMLQNVSVDQRADTVSSIVYEANARMRDPVYGCVGIISFLQNEVSQLKMQLA 115 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++e+ XP_023512989.1 116 EVQAEI 121 *99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence |
MRRRLSTSRF HVVLMEASSS PCASCKLLRR RCTKDCIFAP YFPPNDPLKF AIVHKIFGAS 60 NVSKMLQNVS VDQRADTVSS IVYEANARMR DPVYGCVGII SFLQNEVSQL KMQLAEVQAE 120 ILSFQMQQPV APMTFPTTQM DQSYMFEHSS N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-64 | LBD family protein |