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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | NF-YC | ||||||||
Protein Properties | Length: 263aa MW: 29045.9 Da PI: 4.4288 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 39.2 | 1.5e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++++ ++fdfl d+v + XP_023512170.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGK 69 899**************************************************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTMNSLHL KQCIQTFNVF 60 DFLRDVVGKV PDLGASDAAE DRCISKRRKV EDEDGGNDSE EESKRSKTTE AGHNISGRGR 120 GRGRGRGRGR SSRHSEKDTA IHSDNFEEDL EIPSHPGNNL EKTMPDNGVA EARMENDNIP 180 IDKAVEPSVR NFDLNVNLDE DGDSTSTPVA ASTGSPVKPL TDSKHDEYPG WSVAEMEKMV 240 IDPIQLANLN KSIDDEEDYD EEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 127 | RGRGRGRGRG |
2 | 118 | 128 | RGRGRGRGRGR |
3 | 120 | 129 | RGRGRGRGRG |
4 | 120 | 130 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 3e-49 | NF-YC family protein |