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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | NF-YC | ||||||||
Protein Properties | Length: 280aa MW: 31072.5 Da PI: 4.7169 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.3 | 4.2e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++++ ++fdfl d+v + XP_023512169.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGK 86 5789*************************************************************************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence |
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TMNSLHLKQC IQTFNVFDFL RDVVGKVPDL GASDAAEDRC ISKRRKVEDE DGGNDSEEES 120 KRSKTTEAGH NISGRGRGRG RGRGRGRSSR HSEKDTAIHS DNFEEDLEIP SHPGNNLEKT 180 MPDNGVAEAR MENDNIPIDK AVEPSVRNFD LNVNLDEDGD STSTPVAAST GSPVKPLTDS 240 KHDEYPGWSV AEMEKMVIDP IQLANLNKSI DDEEDYDEEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 144 | RGRGRGRGRG |
2 | 135 | 145 | RGRGRGRGRGR |
3 | 137 | 146 | RGRGRGRGRG |
4 | 137 | 147 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 5e-61 | NF-YC family protein |