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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023512056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | NF-YC | ||||||||
Protein Properties | Length: 228aa MW: 26040 Da PI: 8.8239 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.7 | 7.1e-15 | 121 | 210 | 10 | 99 |
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++ + k ++P+ rikki++ ++ +i ea l+ ka e+f++++ ++ + + ++++l ++++v + + +dfl d vp++ XP_023512056.1 121 EEEEVEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEK 210 44555567789***********9999999**********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MASSKKSSSE AKSKEAGTSK PAPKNKTHNN NNNNARTIDK VYSKKKKVSN NNNNNKHTSN 60 GSVKENEVLP ISAPGDAEED RVETTSKSPN TTKSKKVKRN HGKKEENGYA EEEEEEEEAE 120 EEEEVEEKIY KFPMNRIKKI MRDENSDLRI NQEALFLVNK ATEMFLVQFC KDAYACCAQD 180 RKKSLAYKHL SSVVCKRKRY DFLSDFVPEK LKFEDALKER SMAESGKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 199 | RKKSLAYKHLSSVVCKRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 5e-34 | NF-YC family protein |