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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023511722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 23644.6 Da PI: 7.7851 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.8e-39 | 31 | 132 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r +a+ +++yeA+ar+ dPvyG+v++i++lqqq++ l+a+l XP_023511722.1 31 PCGACKFLRRKCVAECIFAPYFSSEQgAARFAAVHKVFGASNVSKLLLHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQL 125 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 ++k++l XP_023511722.1 126 MQAKAQL 132 9999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MASSSSSSST ANSSVSGGGG GGGGGGGGGS PCGACKFLRR KCVAECIFAP YFSSEQGAAR 60 FAAVHKVFGA SNVSKLLLHV PAHDRCEAVV TIAYEAQARI LDPVYGCVAH IFALQQQVAY 120 LQAQLMQAKA QLAQTLMESG GNMELQWTGS FNNNLSNGIP SNYETQIMNP AVSPQSSVES 180 AANNDAALMF MNHYQESQTL ARRRSASCHG DLGELQALAL RMMRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-59 | LBD family protein |