PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022959739.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 361aa MW: 40616.8 Da PI: 8.6709

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022959739.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.3	5.8e-16	48	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa a++ a++k++g XP_022959739.1 48 SVYRGVTRHRWTGRYEAHLWDkNSWNEgqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 107 78*****************888844467556***********************98 PP
2	AP2	52.5	1.2e-16	150	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ + +g XP_022959739.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDLAAIEHRG 201 89**99******99966...3.6********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MAKISHSPHK ISISTTADPS HSSPIHQSKA LKRTRKSVRR DAPAQRSSVY RGVTRHRWTG 60 RYEAHLWDKN SWNEGQNKKG RQVYLGAYDD EEAAAHAYDL AALKYWGAET VINFPRLTYQ 120 DELKEMEGQS REEYIRYLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG 180 TYATQEEAAR AYDLAAIEHR GLNAVTNFDI SRYIKCLRPG EQHIPDNNRP SSPNAGDTAS 240 EFDPKSFLEI TFPSQSSSSD QPTTAPEPHG GLPSSSSATL ELLIHSSKFK HILERTSAAE 300 TPQTLPESVR PRRCIPDDIQ TYFDCSTQDS DDIAGSDDGI FGYLNSYFPS SASVFHSALD 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MAKISHSPHK ISISTTADPS HSSPIHQSKA LKRTRKSVRR DAPAQRSSVY RGVTRHRWTG  60
RYEAHLWDKN SWNEGQNKKG RQVYLGAYDD EEAAAHAYDL AALKYWGAET VINFPRLTYQ  120
DELKEMEGQS REEYIRYLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAR AYDLAAIEHR GLNAVTNFDI SRYIKCLRPG EQHIPDNNRP SSPNAGDTAS  240
EFDPKSFLEI TFPSQSSSSD QPTTAPEPHG GLPSSSSATL ELLIHSSKFK HILERTSAAE  300
TPQTLPESVR PRRCIPDDIQ TYFDCSTQDS DDIAGSDDGI FGYLNSYFPS SASVFHSALD  360
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-96	AP2 family protein