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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022945519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | AP2 | ||||||||
Protein Properties | Length: 406aa MW: 45657.2 Da PI: 5.5775 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 82 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg+ e Aa+ ++ a++k++g XP_022945519.1 82 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQVYLGRDXE-EAAARTYDLAALKYWG 140 57*******************777788866447******8888.**************98 PP | |||||||
2 | AP2 | 52.9 | 9.1e-17 | 183 | 234 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_022945519.1 183 SKYRGVARHHYNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRG 234 89****************99966...3.5*************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MSISPSASSC SSSSSSCVGS DSAINIKKKK KNLSAPLRPH SEKARIKRRR RNQDESKREI 60 HNNNSTGINN NNNNASSARR SSIYRGVTRH RWTGRFEAHL WDKSSWNSIQ NKKGRQVYLG 120 RDXEEAAART YDLAALKYWG PETTLNFPAE SYTNEMEEMR KVTKEEYLAS LRRRSSGFSR 180 GVSKYRGVAR HHYNGRWEAR IGRVFGSKYL YLGTYNTQEE AAAAYDMAAI EYRGPNAVTN 240 FDISNYIGRR LETKSSVFEA AELPKEEPND SPVSSEGEVV YQPEEQQTTS WPSLQFSTML 300 PLIENSPSMG VMGDDQDLNW SFLDTGFVEV PDLPLEKTSE LADLYFDEIG FEDDIGLMFE 360 TSIEGGDSKE DLNVGKMEMN NAPSPSSSSI ITNSVSCEKD EIVGFC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 50 | KKKKKNLSAPLRPHSEKARIKRRR |
2 | 28 | 51 | KKKKKNLSAPLRPHSEKARIKRRR |
3 | 29 | 52 | KKKKKNLSAPLRPHSEKARIKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-91 | AP2 family protein |