![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022943406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 489aa MW: 53127 Da PI: 7.0794 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022943406.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*******************......55************************997 PP | |||||||
2 | AP2 | 40 | 9.5e-13 | 248 | 297 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ + + XP_022943406.1 248 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIQCN 297 89********.7******...5...334336**********99*********98765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 489 aa Download sequence |
MFDLNLNVDS PDATPNEDSV LFFEKLPQGS GNQMDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFMI NFGILKSGSA NDVVTKELFP IGGTVNPDFG ILQGHNSASS SSNSSRKNWI 120 NLAFDRSGSA GEGRMIQPVQ PQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFILSDYEED LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKYIYLGLFD SEVEAARAYD KAAIQCNGRE 300 AVTNFEPSTY GERVSEGSSE GCRIMLDLNL GISPLSIDNR PKDNEGHLRF QSGPCYANDM 360 STMIESNADA AVSDPSLKGP VMASGHVPLW NGLQQSCLLP SEERVTDKRH ALGSSQGVVP 420 NWAWQIHNQG NATQLPLFSA AASSGFSFSA IPAAILPPCQ PGSTAHNLHF TSAKASPNSP 480 QLNPQQPPP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-134 | AP2 family protein |