PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96854.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 716aa MW: 77659.2 Da PI: 6.509

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.9	3.7e-11	298	354	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g RWR96854.1 298 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 354 57*****************4444.2455535555.779999************98 PP
2	AP2	46.6	8.2e-15	397	448	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RWR96854.1 397 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 448 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MNNWLAFSLS PQEFPPQPQT HASSAVSRLI SGDSVSRSGL GFNSDEVSGS GDVSGDCFDL 60 GSDSTAPSMN IPTLRPDGPF GILEAFNRTH QAQDWNIKNM TMNCETNFKT NSELSMLVGS 120 SSNQNLEHEE PKLEDFLGGH SFNGHDQKLH ECNGIPASYD ASSDYLFSNC TLQLPATATA 180 VTATSNGGGS LNNSNSIGLS MIKSWLRNQP APPQQQLQEN KNEVTSVGTL TNAQTLSLSM 240 STGSQSSSPL PLVMVSGGNG AESSSSENKQ KATSLDGQSG AVEAVPRKSI DTFGQRTSIY 300 RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQGGYDKEEK AARAYDLAAL KYWGSTTTTN 360 FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG 420 NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIIESST LPIGGAAKRL 480 KEAEQTENSV DGRRTDDDNI TSHLTDGISS YGSHHHGWPT IAFPPVQALS MHYPYGQQRG 540 WCKQEHDTIS SHGLQDLHQL HLGSTHNFFQ PSVMHNIMSL DSSSLEHSSG SNSVIYSGGG 600 GGGSNASFQG VVGGNNGYVM PISTVMADQS NQSQGSFGDG EVKQLGYENM LGSTDPFMGR 660 NYYLSQQSPG AVKPNSYDQG SACNNWMPTT VQSLASRATN LAACPGAPIF SVWNDS

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MNNWLAFSLS PQEFPPQPQT HASSAVSRLI SGDSVSRSGL GFNSDEVSGS GDVSGDCFDL  60
GSDSTAPSMN IPTLRPDGPF GILEAFNRTH QAQDWNIKNM TMNCETNFKT NSELSMLVGS  120
SSNQNLEHEE PKLEDFLGGH SFNGHDQKLH ECNGIPASYD ASSDYLFSNC TLQLPATATA  180
VTATSNGGGS LNNSNSIGLS MIKSWLRNQP APPQQQLQEN KNEVTSVGTL TNAQTLSLSM  240
STGSQSSSPL PLVMVSGGNG AESSSSENKQ KATSLDGQSG AVEAVPRKSI DTFGQRTSIY  300
RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQGGYDKEEK AARAYDLAAL KYWGSTTTTN  360
FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG  420
NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIIESST LPIGGAAKRL  480
KEAEQTENSV DGRRTDDDNI TSHLTDGISS YGSHHHGWPT IAFPPVQALS MHYPYGQQRG  540
WCKQEHDTIS SHGLQDLHQL HLGSTHNFFQ PSVMHNIMSL DSSSLEHSSG SNSVIYSGGG  600
GGGSNASFQG VVGGNNGYVM PISTVMADQS NQSQGSFGDG EVKQLGYENM LGSTDPFMGR  660
NYYLSQQSPG AVKPNSYDQG SACNNWMPTT VQSLASRATN LAACPGAPIF SVWNDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-124	AP2 family protein