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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR89345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 823aa MW: 90573.3 Da PI: 5.7642 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ g+Wv+e+r+p +k+ r++lg+f t+e+Aa+a++ a+ +l+g RWR89345.1 38 PVYKGVRRRN-GGKWVCEVREP---NKKSRIWLGTFPTPEMAARAHDVAAMALRG 88 68*****887.9******9998...347*************************98 PP | |||||||
2 | AP2 | 50.6 | 4.9e-16 | 252 | 302 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +Wv+e+r+ps+ + r++lg+f t+e+Aa+a++ a+ +l+g RWR89345.1 252 PVYRGVRRRN-GDKWVCEVREPSK---KSRIWLGTFPTPEMAARAHDVAAMALRG 302 68*****877.9*********864...6*************************98 PP | |||||||
3 | AP2 | 51.1 | 3.3e-16 | 447 | 497 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ rWv+e+r+p gk+ r++lg+f t+e+Aa+a++ a+ +l+g RWR89345.1 447 PVYRGVRRRN-GDRWVCEVREP---GKKSRIWLGTFPTPEMAARAHDVAAMALRG 497 68*****877.9******9998...657*************************98 PP | |||||||
4 | AP2 | 50.7 | 4.4e-16 | 649 | 699 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ rWv+e+r+p gk+ r++lg+f t+e+Aa+a++ a+ +l+g RWR89345.1 649 PVYRGVRRRN-GDRWVCEVREP---GKKSRIWLGTFPTPEMAARAHDVAAMALRG 699 68*****877.9******9998...657************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 823 aa Download sequence |
MVRISNESAP EEEVFATVAT SPPKRRAGRR KFHETRHPVY KGVRRRNGGK WVCEVREPNK 60 KSRIWLGTFP TPEMAARAHD VAAMALRGRS ACLNFADSAW LLPLPASANA KDVQKTAAEA 120 AEAFRPSSSR LKSGNDVRPR PENLTLPPSK DLYMDEQEDS GTGLPGFLTR LAEGVLFSPP 180 PRLGGGFHIS NSSNSNFHSC DEAPETTSSS PSDKSTHSHS SFLDEETSFA TVATSPPKRQ 240 AGRKKFHETR HPVYRGVRRR NGDKWVCEVR EPSKKSRIWL GTFPTPEMAA RAHDVAAMAL 300 RGRSACLNFA DSAWLLPIPA SASAKDIQKA AAEAAEAFRP SESESESVSS QDASAESRTV 360 STEDVELLYM NEEVNFGMDM PGLLASMAEG LLLSPPPPQS LSGFHWDDVV EDCVDMFLDE 420 EQFFTTVTTS PPKRRAGRKK FRETRHPVYR GVRRRNGDRW VCEVREPGKK SRIWLGTFPT 480 PEMAARAHDV AAMALRGRSA CLNFADSAWL LPIPASASAK DIQKAAAEAA EAFRPSESES 540 ESVSSQDEDV GAENRTVSTD DLLLLYTDEE VNFGMDMPGL LASMAEGLLL SPPHSSSGFQ 600 WDDVEDSVDI SFTHSHSNFL DEDQFFATVT TSPPKRRAGR KKFRETRHPV YRGVRRRNGD 660 RWVCEVREPG KKSRIWLGTF PTPEMAARAH DVAAMALRGL SACLNFADSA WLLPIPASAS 720 AKDIQKAAAE AAEAFRPSES ESESVSSQDE DVGAENRTVS TDDLLLLYMD EEVNFGMDMP 780 GLLASMAEGL LLSPPHSSSG FHWDDVEDCV DMSLWSYSNP IGC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-47 | ERF family protein |