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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 402aa MW: 45384.1 Da PI: 9.3134 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.1e-12 | 68 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g RWR87984.1 68 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 124 789******************88887784446666.9*******************98 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 167 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g RWR87984.1 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDIAAIEYRG 218 89****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence |
MEGVLVKREG NGGRRGGGAI EGEEPKCIKR RRREPSMAVV GNKDDKREVQ DPSSTTTSNA 60 TAPVKRSSRF RGVSRHRWTG RYEAHLWDKG SWNVTQKKKG KQGAYDEEES AARAYDLAAL 120 KYWGPTTFTN FPVSDYEKEI QIMQTVTKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR 180 WEARIGRVFG NKYLYLGTYS TQEEAAAAYD IAAIEYRGIN AVTNFDLSTY IRWLRPGADA 240 THKEPRANGE SRAVTTSSTI YAKEHTQPFF NNHLFAMDDI GSPKKQEHHP WLISGSSNNK 300 SSPRTALSVL LRSSIFRELV EKNSNASESE VEGDETKSHQ HPSNDDDEFS LNYYNGIANV 360 PYVCPTNDNT LVSMELQEES TSYYNRSGQS LWSNVLNMSS IH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 18 | GGRRGGG |
2 | 25 | 31 | PKCIKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 4e-85 | AP2 family protein |