PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR87984.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family AP2
Protein Properties Length: 402aa    MW: 45384.1 Da    PI: 9.3134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR87984.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-1268124155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  RWR87984.1  68 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 124
                 789******************88887784446666.9*******************98 PP

2AP251.23.2e-16167218155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  RWR87984.1 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDIAAIEYRG 218
                 89****99**********99966...3.6*************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MEGVLVKREG NGGRRGGGAI EGEEPKCIKR RRREPSMAVV GNKDDKREVQ DPSSTTTSNA  60
TAPVKRSSRF RGVSRHRWTG RYEAHLWDKG SWNVTQKKKG KQGAYDEEES AARAYDLAAL  120
KYWGPTTFTN FPVSDYEKEI QIMQTVTKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAAAYD IAAIEYRGIN AVTNFDLSTY IRWLRPGADA  240
THKEPRANGE SRAVTTSSTI YAKEHTQPFF NNHLFAMDDI GSPKKQEHHP WLISGSSNNK  300
SSPRTALSVL LRSSIFRELV EKNSNASESE VEGDETKSHQ HPSNDDDEFS LNYYNGIANV  360
PYVCPTNDNT LVSMELQEES TSYYNRSGQS LWSNVLNMSS IH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218GGRRGGG
22531PKCIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-85AP2 family protein