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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR85884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 452aa MW: 49636 Da PI: 6.0293 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 146 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RWR85884.1 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 195 78*******************......55************************997 PP | |||||||
2 | AP2 | 39.4 | 1.5e-12 | 238 | 287 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ + + RWR85884.1 238 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDRAAIQCN 287 89********.7******5553..2.26**********99*********98765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence |
MLLDLNLTTE KLPEAFGGQM DESGTSNSSI VNADASINGG GDDDSSSTNP GEVSMFSFDI 60 LKRGRFDVEE EEEDNRVSRE VVTRELFPVG GGAGDGFRST ESSSRPHWAA LGFCRADVGE 120 QMPGKVVAQP PPAAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH 180 AAARAYDRAA IKFRGVEADI NFNLSDYEDD LKQMRNLSKE EFVHILRRQS TGFSRGSSKY 240 RGVTLHKCGR WEARMGQFLG KKYIYLGLFD NEVEAARAYD RAAIQCNGRE AVTNFDPSTY 300 EGELVSEADS AGIANNLDLN LGISLSSVAC NEKVRDGSMD FHFNSNPFEA QKAKMESSAS 360 VTMDQPHCLR VPAEHPPLWT GGYPGFFPNF KESLMGKVES GSPSFSNWAW QLQGSTAVPL 420 LSSAASSGFS ATTATTAALP PHTTCHYPPY YF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-115 | AP2 family protein |