PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR79664.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family AP2
Protein Properties Length: 378aa    MW: 42458.9 Da    PI: 4.891
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR79664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-1257114355
         AP2   3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV++++++gr++A+++d  s+n    k+ ++ ++g ++ +e Aa  ++ a++k++g
  RWR79664.1  57 YRGVTRHRWTGRYEAHLWDkSSWNSvqnKKgRQGNVGAYDDEEAAAHTYDLAALKYWG 114
                 9******************777788866447*************************98 PP

2AP252.21.5e-16157208155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a+++a+ +++g
  RWR79664.1 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDKAAIEYRG 208
                 89****99**********99966...3.6*************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MDSSCLPSNS ISSSSSSSSF STPSQPTKPK KRTRRSTNPE KSKRNFGATP GRRSSMYRGV  60
TRHRWTGRYE AHLWDKSSWN SVQNKKGRQG NVGAYDDEEA AAHTYDLAAL KYWGPDTILN  120
FPLDTYAKEY EEMQAMSKEE YLASLRRRSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG  180
NKYLYLGTYS TQEEAAAAYD KAAIEYRGLN AVTNFDISHY IRCQPPPEPL QPPSTSHEVP  240
PPLIQLPENL DPIDQPTIAD PLQEQPWNFC MDPTFNLVPI SDITLEIPEE LEDLFNGVGF  300
EENIELLFEG SEGTTTTSSH EGGVDQMKVD GIFDDFGMYD GNFLSGFDQV DGCGWLEETF  360
TSCVVDSISY PFPLSICS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12844KPKKRTRRSTNPEKSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.14e-89AP2 family protein