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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR79664.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 378aa MW: 42458.9 Da PI: 4.891 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.8 | 1.1e-12 | 57 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d s+n k+ ++ ++g ++ +e Aa ++ a++k++g RWR79664.1 57 YRGVTRHRWTGRYEAHLWDkSSWNSvqnKKgRQGNVGAYDDEEAAAHTYDLAALKYWG 114 9******************777788866447*************************98 PP | |||||||
2 | AP2 | 52.2 | 1.5e-16 | 157 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g RWR79664.1 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDKAAIEYRG 208 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence |
MDSSCLPSNS ISSSSSSSSF STPSQPTKPK KRTRRSTNPE KSKRNFGATP GRRSSMYRGV 60 TRHRWTGRYE AHLWDKSSWN SVQNKKGRQG NVGAYDDEEA AAHTYDLAAL KYWGPDTILN 120 FPLDTYAKEY EEMQAMSKEE YLASLRRRSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG 180 NKYLYLGTYS TQEEAAAAYD KAAIEYRGLN AVTNFDISHY IRCQPPPEPL QPPSTSHEVP 240 PPLIQLPENL DPIDQPTIAD PLQEQPWNFC MDPTFNLVPI SDITLEIPEE LEDLFNGVGF 300 EENIELLFEG SEGTTTTSSH EGGVDQMKVD GIFDDFGMYD GNFLSGFDQV DGCGWLEETF 360 TSCVVDSISY PFPLSICS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 44 | KPKKRTRRSTNPEKSKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.1 | 4e-89 | AP2 family protein |