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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR72001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 651aa MW: 70329.2 Da PI: 6.24 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.1 | 3.3e-11 | 273 | 329 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g RWR72001.1 273 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 329 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 374 | 423 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RWR72001.1 374 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 423 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence |
MGSMNNWLAF SLNSQELPPQ SQSHAPQAFS SGLGFNSNEV VSSCEVSSDN FDLPSDSTVG 60 QFGILDAYNR THQPQDWSME GGETHFKTGS DLSMIVGSSS NQNLNQGEPK LEDFLGGHSY 120 ANSCNYMYSN CSMQQLPSQT TMVEMPTNGC GDGINSSSSN TIGLSMIKTW LRSQPAPTQP 180 ESKNDAGGSG DVTGSIGASA NAQALSLSMS TGSQSSTPLP LLTASGGGRS LGGGESSLEN 240 KQEANSSNAL DSQTGAIEAV PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG 300 QTRKGRQGGY DKEEKAARAY DLAALKYWGS TTTTNFPISN YERELEEMKN MTRQEYVASL 360 RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK 420 FRGLNAVTNF DMSRYDVKSI IESTTLPIGG AAKRLKEAEQ LESSMNGRRM GNNIASQLTD 480 GISSYGSHHP GWPAAAFQQG QPLSMQYPYD PQRGWLKQEP DNFVASHGLH GLQQLHLGNP 540 HNMLQPPIMP NPNVMSLEQL ALEQSSGSNS VIYGGGGSGS NGDYQGAMGG SGGYIMPINT 600 VIADQGQQQN NGNFGDQNML ASADSYAGRN MYYNNMGVGQ GAPIFSVWND T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 234 | GGGRSLGGG |
2 | 227 | 235 | GGGRSLGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-128 | AP2 family protein |