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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR71998.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | AP2 | ||||||||
Protein Properties | Length: 631aa MW: 68207.7 Da PI: 5.5917 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.2 | 3.2e-11 | 270 | 326 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g RWR71998.1 270 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 326 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 35.9 | 1.8e-11 | 358 | 403 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RWR71998.1 358 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 403 899*********988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence |
MNNWLAFSLN SQELPPQSQS HAPQAFSSGL GFNSNEGVSS CEVSSDNFDL PSDSTVGQFG 60 ILDAYNRTHQ PQDWSMEGGE THFKTGSDLS MIVGSSSNQN LNQGEPKLED FLGGHSYANS 120 CNYMYSNCSM QQLPSQTTMV EMPTNGCGDG INSSSSNTIG LSMIRTWLRS QPAPTQPESK 180 NDAGGSGDVT GSIGASANAQ ALSLSMSTGS QSSTPLPLLT ASGGGRSLGG GESSLENKQE 240 ANSSNALDSQ TGAIEAVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR 300 KGRQGGYDKE EKAARAYDLA ALKYWGSTTT TNFPISNYER ELEEMKNMTR QEYVASLRRH 360 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI 420 IESTTLPIGG AAKRLKEAEQ LESSMNGRRM GNNIASQLTD GISSYGSNHP GWPAAAFQQG 480 QPLSMQYPYD PQRGWLKQEP DNFVASHGLH GLQQLHLGNP HNMLQPSIMP NPNVMSLEQL 540 ALEQSSGSNS VIYGGSGSGS NGDYQGAMGG SGGYIMPINT VIADQGQQQN NGNFGDQNML 600 ASADSYAGRN MYYNNMGVGQ GAPIFSVWND T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 231 | GGGRSLGGG |
2 | 224 | 232 | GGGRSLGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-112 | AP2 family protein |