PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023007161.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 487aa MW: 56294.8 Da PI: 5.3368

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023007161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.1	2.3e-28	39	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+ aL+++r++m++++r+++lk+plWeevs+k++e g++r++k+Ckek+en+ k++k+++++++++ ++ ++++yf+qlea XP_023007161.1 39 RWPREETIALLKVRSSMDTAFRDASLKAPLWEEVSRKLAEFGYKRNAKKCKEKFENIYKYHKRTRDIRSGK--PNGKNYRYFEQLEA 123 8******************************************************************95..66679*****85 PP
2	trihelix	100.5	1.4e-31	319	404	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++++ +++++ k+plWee s++m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a XP_023007161.1 319 RWPKEEIDALIQLRTNLQMKYQENGPKGPLWEEMSQAMKKLGYDRSAKRCKEKWENINKYFKRVKERNKKR-PEDSKTCPYFQQLDA 404 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MLEISPSPEN SAAAAAEEDG AASSAGFKEE SDRSWAGNRW PREETIALLK VRSSMDTAFR 60 DASLKAPLWE EVSRKLAEFG YKRNAKKCKE KFENIYKYHK RTRDIRSGKP NGKNYRYFEQ 120 LEALDNHPLP PSQADSMEEI PNNIVHNPIP CSIVNPGSNF VETTTTSIST SMTSCSSKES 180 GGARKKKRKF VEFFERLMNE VIEKQEKLQR KFMEALEKCE EERLAREEEW RVQELARIKK 240 ERERLNQERS IAAAKDAALL SFLKMFSEQM GTVPFPESLI LMENLTEKQD DGNVERNTSN 300 QENNNSNNGN SNQISSSSRW PKEEIDALIQ LRTNLQMKYQ ENGPKGPLWE EMSQAMKKLG 360 YDRSAKRCKE KWENINKYFK RVKERNKKRP EDSKTCPYFQ QLDALYKLKS KKVVVENPTK 420 PNYELKPEEL LLHMMEGQEE ESHQQPESAT DNGEAQNTDQ NQDEDDDDDE DYHIVAKNNS 480 NEMEVGI

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MLEISPSPEN SAAAAAEEDG AASSAGFKEE SDRSWAGNRW PREETIALLK VRSSMDTAFR  60
DASLKAPLWE EVSRKLAEFG YKRNAKKCKE KFENIYKYHK RTRDIRSGKP NGKNYRYFEQ  120
LEALDNHPLP PSQADSMEEI PNNIVHNPIP CSIVNPGSNF VETTTTSIST SMTSCSSKES  180
GGARKKKRKF VEFFERLMNE VIEKQEKLQR KFMEALEKCE EERLAREEEW RVQELARIKK  240
ERERLNQERS IAAAKDAALL SFLKMFSEQM GTVPFPESLI LMENLTEKQD DGNVERNTSN  300
QENNNSNNGN SNQISSSSRW PKEEIDALIQ LRTNLQMKYQ ENGPKGPLWE EMSQAMKKLG  360
YDRSAKRCKE KWENINKYFK RVKERNKKRP EDSKTCPYFQ QLDALYKLKS KKVVVENPTK  420
PNYELKPEEL LLHMMEGQEE ESHQQPESAT DNGEAQNTDQ NQDEDDDDDE DYHIVAKNNS  480
NEMEVGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	90	KRNAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-61	Trihelix family protein