PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023004220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | SBP | ||||||||
Protein Properties | Length: 306aa MW: 34087.4 Da PI: 8.4923 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.8 | 1.8e-39 | 52 | 128 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023004220.1 52 CMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 128 **************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MYLRLRGIGH MGEGSMDDNE GTRVTLIESL SSSLRLTKRS RTPYNGPQVP SCMVDGCSSD 60 LSKCRDYHRR HKVCEFHSKT PKVTICGREQ RFCQQCSRFH SLVEFDDRKR SCRKRLDGHN 120 RRRRKPQPAT MTLNAGRFLY SNQGPRFLPF GNQLLSACND LSSSWIGTIK PEHNDALCSS 180 NSQLDVADRR KSMFPGLSGC DYKEKQPPFL NVGSSNVGNV QKVVGNGCAL SLLSTPVEAG 240 EINNLTSMVQ SNLIPSSHFS HTDGLGFESD LVSPRLVSDG SSDANIRCYS MFEDGPDGSS 300 IDLFWF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 125 | RKRSCRKRLDGHNRRRRK |
2 | 108 | 126 | RKRSCRKRLDGHNRRRRKP |
3 | 109 | 127 | RKRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-45 | SBP family protein |