PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023004172.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 415aa    MW: 47449.9 Da    PI: 4.9479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023004172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3143.2e-96274143374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL ecA+a+s++d +++++lL+ l+elasp+gd+ q+la yf++AL  ++++++ ++yk+l + ++++++ +++l+    f+evsP+++f+h++
  XP_023004172.1  27 TLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVA 121
                     689***********************************************************9999998888888888888************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledlel 191
                      N aIlea+e+e+++HiiD++ + ++QWp+Ll++La+R++++p+l++T+v+  +++ k  ++e+g+r++kfA+ +gvpfefn++   ++l+dle 
  XP_023004172.1 122 SNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVST-TTKVKSLMKEIGQRMEKFARLMGVPFEFNPItNLNQLSDLEN 215
                     ****************************************************.6678999***********************95556******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerik 284
                     e+L+v+++Ea+a+n+  +l ++      +e+ r++v++++ksl+P+v+++ve+ead   ++++Fl  f e+l++y+  f +le+ + ++s+e+  
  XP_023004172.1 216 EALKVEEDEAIAINCNGALRTVK-----IEE-RNAVISMLKSLKPRVLTIVEEEADFisSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLG 304
                     *****************999997.....666.89**********************9867889******************************** PP

            GRAS 285 vErellgreivnvvacegae...r...rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrve........ee.....sgsl 358
                     +Ere  +r+iv ++ c +++   r    er+e+ ++W++rlee GF+++++s+++++++k+ll+++k ++  +++         ee     s+ +
  XP_023004172.1 305 LERE-CSRNIVRLLGCGNESeleReltSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKpGWSlMHWTgatdtnrdEEeggddSNGI 398
                     ****.89********9766422232226899************************************533335555777666651156665999* PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                     +l+Wk++p+v++SaW+
  XP_023004172.1 399 YLTWKEEPVVWISAWK 414
                     ***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    
MQSSTSQSSE YSLDHSLPAT VGKWASTLLN ECARAISDKD SNKIHHLLWM LNELASPYGD  60
SDQKLAYYFL QALFCKVTET GLTCYKTLIT VAEKNYSFDS ALKLILKFQE VSPWMTFGHV  120
ASNGAILEAL ERETKLHIID ISDTLCTQWP TLLESLATRN DDTPHLKLTV VSTTTKVKSL  180
MKEIGQRMEK FARLMGVPFE FNPITNLNQL SDLENEALKV EEDEAIAINC NGALRTVKIE  240
ERNAVISMLK SLKPRVLTIV EEEADFISSK NKFLSYFDEC LRFYTLYFKM LEECFEATSN  300
EKLGLERECS RNIVRLLGCG NESELERELT SERREKGKQW SKRLEERGFS SARFSDDVMD  360
DVKALLKRYK PGWSLMHWTG ATDTNRDEEE GGDDSNGIYL TWKEEPVVWI SAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein