PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003091.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 380aa MW: 42447 Da PI: 5.9899

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_023003091.1 153 FCEICGKGFKRDANLRMHMRAH 174 6*******************99 PP
2	zf-C2H2	10.9	0.0015	272	287	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ XP_023003091.1 272 CGTTFSRKDKLFGHMT 287 **************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ 60 MDAVSSEIAS VIQQIVVNGA ALLACAQVKT SNTPDLKAST SRTHSIPVTE KSMVELKVEG 120 VDEITRIESE DFEMNCELVE LDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT 180 PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNKTHNKFRP LKSLICVKNH FKRSHCPKMF 240 SCNRCNKKNF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMTLFE GHMPAVADDD 300 DGKGKATAAE AAATPEMDED GDSNRILKDV NFPDAWNSPD DGSFESFLDG FGSIENHCLQ 360 EVLGFPHSFD SESEWKFCSD

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ  60
MDAVSSEIAS VIQQIVVNGA ALLACAQVKT SNTPDLKAST SRTHSIPVTE KSMVELKVEG  120
VDEITRIESE DFEMNCELVE LDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT  180
PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNKTHNKFRP LKSLICVKNH FKRSHCPKMF  240
SCNRCNKKNF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMTLFE GHMPAVADDD  300
DGKGKATAAE AAATPEMDED GDSNRILKDV NFPDAWNSPD DGSFESFLDG FGSIENHCLQ  360
EVLGFPHSFD SESEWKFCSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	3e-75	C2H2 family protein