PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023002062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Trihelix
Protein Properties Length: 488aa    MW: 56277.5 Da    PI: 7.3444
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023002062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.5e-1394145157
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenl 57 
                     +W+++e laL+++r+++++ + ++      We+vs+k+ e gf+r+p++Ckek+e+ 
  XP_023002062.1  94 QWSNDELLALLRIRSNIDNCFPES-----TWEHVSRKLGEVGFTRTPEKCKEKFEDE 145
                     7******************99998.....9*************************96 PP

2trihelix90.71.5e-28365465186
        trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                     rW+++evlaL+++r ++ ++ ++++                lk+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tc
  XP_023002062.1 365 RWPRDEVLALVNVRCSLYDNNSNNNnnsdqdksggtdqatlLKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SIDSRTC 458
                     8*************944333333222455566677777888*********************************************8.78889** PP

        trihelix  80 pyfdqle 86 
                     pyf+ql 
  XP_023002062.1 459 PYFHQLS 465
                     *****95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MFEGSVSEQL HQFLAPRTTT TTTTTTPPNS NSLPFLLHSP NFNFHPFDSY NPSSNHHLVH  60
QSSENDNETT TTTTTMANLS VAMDLEEDHH HHNQWSNDEL LALLRIRSNI DNCFPESTWE  120
HVSRKLGEVG FTRTPEKCKE KFEDEKTEDG GAVVVVPEEA KHERGNDNND DNDEQQQSSK  180
SKKKRKTRTT RQREFEVLKG YCEDIVKNMM IQQEEIHSKL LHEMLKREEE KIAKEECWKK  240
QQMERFHKEL QMMAQEQAIA SDRQATIIEI LNQISISNPF SSSKSKKDLQ NLLHSLNHHH  300
NNNNNLPNSP SSSSLIQTQN PKNPSSSTQI LPPQDPNSNP PPFSIQKLPQ NPKTREKEVD  360
DVGKRWPRDE VLALVNVRCS LYDNNSNNNN NSDQDKSGGT DQATLLKAPL WERISQGMLQ  420
LGYKRSAKRC KEKWENINKY FRKTKDVNKK RSIDSRTCPY FHQLSTLYNQ GGNRSMENLP  480
DNVVRKPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-72Trihelix family protein