PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023000072.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 698aa    MW: 76481.4 Da    PI: 5.712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023000072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.23.1e-1003406973374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++++++ e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL+  l++ ++  +       +s+++ + ++aa+k fse+sP+l+f+++
  XP_023000072.1 340 DQIFRAIELIETGNSVLAQGILARLNHHlSSPIGKPFQRAAFYFKEALQLLLQNPSNPSS----NVISSPYSIIFKVAAYKSFSELSPVLQFANF 430
                     688999********************999************************9333333....333334559********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle. 190
                     t Nqa+lea++g +r+HiiDfdi++G+QW++L+q+La R +g+  l+iT+++s +++++ el  t+e+L++fA+ lg+ fe ++l +++l++ + 
  XP_023000072.1 431 TSNQALLEAFNGFNRLHIIDFDIGYGGQWASLMQELALR-NGSGFLKITAFASTSTNDEFELGFTQENLKNFANDLGIGFELEILNVESLNSGSw 524
                     ***************************************.5679*********9999****************************8887777642 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +  L+v ++Ea+aVnl +   +++++s+sl+     vL++vk+l Pk+vv+v++  ++ +  F +r+++al++ys l++s++a    + ++++k+
  XP_023000072.1 525 PLPLNVTENEAIAVNLPV--GSFFNDSLSLPM----VLRFVKHLCPKIVVCVNRGGNRMDVAFPQRVINALHCYSGLLESMDAV-TVNMDTQMKI 612
                     66789999********99..789999****99....*********************************************776.467899**** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er ll++ i+++v   +a+    +e+l  Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl W++++LvsvSaWr
  XP_023000072.1 613 ERYLLQPGIEKLVRSGEAW----KERLPPWRSLFLSSGFSPLTFSNFTESQADCLVQRTPVQGFHVEKRQSSLVLSWQRKELVSVSAWR 697
                     ******************9....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
MKAMPLPLSF EDFRPNGVLN FTSLSDSPPP PQLRRHNWSC STDNTNLLKD ICYVGAAEPT  60
SVLDTRRSPS PPTSSSTLSS SFGGGGGNAS TDTAVVAPPS SLPQNPSPLD KCGGGALGID  120
DWESVLPESP GHGPSVLGLI MSDVEDPSLG LNKLLQNGGG GGGGSHLDLD FSGGVSGVDH  180
GFVFEPNTLA GESIVDPSCN DFHNGRLFPG VFQNQNQMME AIDEKPQIFN SPQLMMNQNQ  240
TQFTQNPALF MPLPYGSPVQ DHHQNHHHNL LVPPPAKRFN SGSIGANYQE IMNRRQQQAQ  300
QVQVQMFAQQ QRASIAAAMA KQKMVDEEIA NQQLQQAISD QIFRAIELIE TGNSVLAQGI  360
LARLNHHLSS PIGKPFQRAA FYFKEALQLL LQNPSNPSSN VISSPYSIIF KVAAYKSFSE  420
LSPVLQFANF TSNQALLEAF NGFNRLHIID FDIGYGGQWA SLMQELALRN GSGFLKITAF  480
ASTSTNDEFE LGFTQENLKN FANDLGIGFE LEILNVESLN SGSWPLPLNV TENEAIAVNL  540
PVGSFFNDSL SLPMVLRFVK HLCPKIVVCV NRGGNRMDVA FPQRVINALH CYSGLLESMD  600
AVTVNMDTQM KIERYLLQPG IEKLVRSGEA WKERLPPWRS LFLSSGFSPL TFSNFTESQA  660
DCLVQRTPVQ GFHVEKRQSS LVLSWQRKEL VSVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-141GRAS family protein