PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022998680.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 384aa MW: 42374.8 Da PI: 9.0761

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022998680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022998680.1 49 YVCEICNQGFQRDQNLQMHRRRH 71 9*********************9 PP
2	zf-C2H2	15.9	3.8e-05	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022998680.1 126 WVCQKCSKGYAVQSDYKAHLKTC 148 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR 60 DQNLQMHRRR HKVPWKLLKR ESPIVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH 120 SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ 180 QQSQTLQPAA CLSQTASSPS PSSDTNISSA PTWAALIAPP ISKPPDANNN GSPHDHNLDL 240 KLSTGSNSNP HPNLVEGNKG CSSIKLQLSI GSCEFVDGAR DVRDEAGQTL RVAMAEKAYA 300 EEARQQAKRQ VEMAEQEFAN AKRMRQQAQA ELDKAIALKQ TAIKRVNSTI LEITCQACQK 360 QFQAKTTTTT TASTTTTTTA SCRS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR  60
DQNLQMHRRR HKVPWKLLKR ESPIVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH  120
SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ  180
QQSQTLQPAA CLSQTASSPS PSSDTNISSA PTWAALIAPP ISKPPDANNN GSPHDHNLDL  240
KLSTGSNSNP HPNLVEGNKG CSSIKLQLSI GSCEFVDGAR DVRDEAGQTL RVAMAEKAYA  300
EEARQQAKRQ VEMAEQEFAN AKRMRQQAQA ELDKAIALKQ TAIKRVNSTI LEITCQACQK  360
QFQAKTTTTT TASTTTTTTA SCRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-129	C2H2 family protein