PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022993952.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 476aa    MW: 52475 Da    PI: 5.4403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022993952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.86.4e-95794612373
            GRAS   2 velLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsP 89 
                      +lL+++A+a+  ++++  laq +L rl+el ++++g++++Rl+ay+++A +  l      ++  +p ++ + ++     +++laa++l++++sP
  XP_022993952.1  79 YHLLMAVADAMFGDNKSreLAQVILIRLNELvSTSHGTNLERLTAYYAQAFQDLLDC--AAVSGGVPNKPHHLHRddhsPTDVLAAFQLLQDMSP 171
                     699*******9876655459***********777889****************9987..3333333333222211224599************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav+ ++rvHi+D++i++G+QW++L+qa+ sR+++pp  +lRiT++++  s+     +++etg+rL  fA+++g pf+f+ 
  XP_022993952.1 172 YVKFGHFTANQAILEAVADDRRVHIVDYNIMEGIQWASLMQAFVSRKDSPPapHLRITVISRGPSSrrWIGTVQETGRRLVAFAASIGQPFSFHQ 266
                     ***********************************************554444********96555567789*********************** PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsle 272
                        ++ e+++++ L++ +gEal+Vn+vl+l ++ ++s ++     ++L   k+l+P++v++ve+e++h+ +   ++  +fl++le ysa++dsle
  XP_022993952.1 267 CKLDSDESFRPSGLKLVRGEALVVNCVLHLPHFSNSSPESIA---SFLAGAKTLNPRLVTLVEEEIEHGPTidgDYKVQFLDSLERYSAIYDSLE 358
                     9999*****************************966655555...9**********************744444********************* PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerh..etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkd 364
                     a++p ++++r  vE+++lg++i+  +   g+ +r+ +  e+   W erle++G+k++++s  + +qa+ll+  ++ dgyrvee  s+ lvlgWk+
  XP_022993952.1 359 AGIPMKNRARGLVEKVFLGPRISATLRRIGQPQRAATaaEENCLWGERLEKMGLKAAAISFANHCQARLLVDLFN-DGYRVEELgSNKLVLGWKS 452
                     ****************************9998555441155667*******************************.******987999******* PP

            GRAS 365 rpLvsvSaW 373
                     ++L+svS W
  XP_022993952.1 453 KRLLSVSIW 461
                     ********* PP
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    
MAMAVDNAFN GVAVSNYSTS TNNSDDDFHD LFDSIMSIDA LPYSPQVVEV DGGTNCNSPS  60
NPAEDREEEE EEFKSLRLYH LLMAVADAMF GDNKSRELAQ VILIRLNELV STSHGTNLER  120
LTAYYAQAFQ DLLDCAAVSG GVPNKPHHLH RDDHSPTDVL AAFQLLQDMS PYVKFGHFTA  180
NQAILEAVAD DRRVHIVDYN IMEGIQWASL MQAFVSRKDS PPAPHLRITV ISRGPSSRRW  240
IGTVQETGRR LVAFAASIGQ PFSFHQCKLD SDESFRPSGL KLVRGEALVV NCVLHLPHFS  300
NSSPESIASF LAGAKTLNPR LVTLVEEEIE HGPTIDGDYK VQFLDSLERY SAIYDSLEAG  360
IPMKNRARGL VEKVFLGPRI SATLRRIGQP QRAATAAEEN CLWGERLEKM GLKAAAISFA  420
NHCQARLLVD LFNDGYRVEE LGSNKLVLGW KSKRLLSVSI WASSSSSSSS SSSDSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-145GRAS family protein