PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022993177.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 374aa MW: 41440.1 Da PI: 8.7185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022993177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022993177.1 79 YVCEICNQGFQRDQNLQMHRRRH 101 9*********************9 PP
2	zf-C2H2	14.8	8e-05	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_022993177.1 158 WVCDKCSKAYAVHSDFKAHLKTC 180 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MLKPSSSSSS AAAAAAAAAA SAASTPYSSA APPLPPPPPP PNSDHGLTTK RKRRPAGTPD 60 PDAQVVSLSP KTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKK ADTVDAIKKK 120 VFVCPEPTCL HHDPCHALGD LVGIKKHFRR KHSNQKHWVC DKCSKAYAVH SDFKAHLKTC 180 GTRGHSCDCG RVFSRVESFI EHQDACNIRQ MRSDQWQLVP LPLPLLQTAN PLRGFPILSS 240 NKDHDLNLHL SSPSSAFLNL SIGSNKEPND KRQLELAIEE KAYADEARRD AKRQIEIAEV 300 EFTNAKMIRQ QAQAELEKAR ILKEEASRKM SSTIMEITCE TCRLHFHISS VAAAEETSLA 360 ISYMSSATTE GDGE

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MLKPSSSSSS AAAAAAAAAA SAASTPYSSA APPLPPPPPP PNSDHGLTTK RKRRPAGTPD  60
PDAQVVSLSP KTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKK ADTVDAIKKK  120
VFVCPEPTCL HHDPCHALGD LVGIKKHFRR KHSNQKHWVC DKCSKAYAVH SDFKAHLKTC  180
GTRGHSCDCG RVFSRVESFI EHQDACNIRQ MRSDQWQLVP LPLPLLQTAN PLRGFPILSS  240
NKDHDLNLHL SSPSSAFLNL SIGSNKEPND KRQLELAIEE KAYADEARRD AKRQIEIAEV  300
EFTNAKMIRQ QAQAELEKAR ILKEEASRKM SSTIMEITCE TCRLHFHISS VAAAEETSLA  360
ISYMSSATTE GDGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-140	C2H2 family protein