PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022991356.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 318aa MW: 34907.4 Da PI: 8.5442

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022991356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.5	1e-39	40	116	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_022991356.1 40 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 116 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQIPSC MVDGCSSDLS KCRDYHRRHK 60 VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR RRKPQPATMT 120 LNAGRFLYGN QGPRFLPFGN QLLSASNDVS SSWIGMIKPE SNAPVCSGNS QFDFGDRRKS 180 MLPGSLACDY KEKQVAISCI PVGLLPKSSD ARPYLDVESC NRGNVQKVLG NGPDQFFNSD 240 CALSLLSTPV EPGEINLSSM SQSNLITPAH FIHSDGLGLE SDPVNSGLVS DGSSHANIRC 300 YPTFQDGLAG SSVDLFRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	113	RKRSCRKRLDGHNRRRRK
2	96	114	RKRSCRKRLDGHNRRRRKP
3	97	115	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-46	SBP family protein