PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022989683.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 347aa MW: 39019.1 Da PI: 6.5675

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022989683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.2e-41	66	143	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls++keyhrrh+vC+ hsk+pvv+v+g+e+rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ XP_022989683.1 66 TCLVDGCDSDLSNCKEYHRRHRVCDLHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 143 5**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MDWGWRKISG ERVTFQENKQ NPTSFSDSIG SNNEEEQILK GSSQESYTSH GSSKRTRLLH 60 ASQNQTCLVD GCDSDLSNCK EYHRRHRVCD LHSKTPVVMV RGEEKRFCQQ CSRFHSLGEF 120 DEVKRSCRKR LDGHNRRRRK PQPESLFISS RDFLSNCKGP IVLQFSDQQV HVPDELGRSL 180 WPMRTEENSS LVPSNSSGFF SFGGGDNKQL PFLQPKNGSK QGKHMVSSQF CFNQQLPDTI 240 SQVSEGDSQK TVPPNNSPDD SGCALYLLSS HPVQALPEAG LSSLVQSHLS LPVQTQEETE 300 LNFSSLSDFS ESFGSKDKAV SKTNVHHSEL GLEMEEESNG LFPISWE

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MDWGWRKISG ERVTFQENKQ NPTSFSDSIG SNNEEEQILK GSSQESYTSH GSSKRTRLLH  60
ASQNQTCLVD GCDSDLSNCK EYHRRHRVCD LHSKTPVVMV RGEEKRFCQQ CSRFHSLGEF  120
DEVKRSCRKR LDGHNRRRRK PQPESLFISS RDFLSNCKGP IVLQFSDQQV HVPDELGRSL  180
WPMRTEENSS LVPSNSSGFF SFGGGDNKQL PFLQPKNGSK QGKHMVSSQF CFNQQLPDTI  240
SQVSEGDSQK TVPPNNSPDD SGCALYLLSS HPVQALPEAG LSSLVQSHLS LPVQTQEETE  300
LNFSSLSDFS ESFGSKDKAV SKTNVHHSEL GLEMEEESNG LFPISWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	141	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-46	SBP family protein