PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022988306.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 500aa MW: 55958 Da PI: 8.5421

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022988306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	408	430	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k+F + L H r+H XP_022988306.1 408 HKCPICEKVFASGQALGGHKRSH 430 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MEANLASRHV CKLCNKSFAC GRSLGGHMRS HLTNNLVDSD EKHSRTSLQF ADFSAGSVSN 60 MEEEEVDMEG GNLAGFGYGL RKNPKKTQKL EFLSEESSLQ DKFCRECGKG FQSWKALFGH 120 MKCHSERVVS SSEELEEPDS HITDAKQKLV MDIQSDNETE APKNKRKRSR RRRTAQMGTE 180 NSITSFSFAT DSSVFEIQQE QEVAISLMLL SMDVGKWVGF NSPVESSDNN SKFLDTPSAV 240 ESKTSVSNKL KVKKMESEVK KPEQSSSAFM NKGKMIDQRS GSKSFPQKND QNQARFSSDM 300 IAKSGNKTLA EFWDSKICKK PKKRSKFECD ICNKIFHSYQ ALGGHRASHK KLKGCFVESA 360 MEDEEEEIDS ESSAEMAISA YPTAESKLSK GLNNGEMGYQ IPKKSSKHKC PICEKVFASG 420 QALGGHKRSH LISGSEAKNR ATIQIQKQVP EIRRFLDLNL PPEPVEIDNK NHNLASLKHP 480 WWAAANEHKH EALVNVGFHI

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MEANLASRHV CKLCNKSFAC GRSLGGHMRS HLTNNLVDSD EKHSRTSLQF ADFSAGSVSN  60
MEEEEVDMEG GNLAGFGYGL RKNPKKTQKL EFLSEESSLQ DKFCRECGKG FQSWKALFGH  120
MKCHSERVVS SSEELEEPDS HITDAKQKLV MDIQSDNETE APKNKRKRSR RRRTAQMGTE  180
NSITSFSFAT DSSVFEIQQE QEVAISLMLL SMDVGKWVGF NSPVESSDNN SKFLDTPSAV  240
ESKTSVSNKL KVKKMESEVK KPEQSSSAFM NKGKMIDQRS GSKSFPQKND QNQARFSSDM  300
IAKSGNKTLA EFWDSKICKK PKKRSKFECD ICNKIFHSYQ ALGGHRASHK KLKGCFVESA  360
MEDEEEEIDS ESSAEMAISA YPTAESKLSK GLNNGEMGYQ IPKKSSKHKC PICEKVFASG  420
QALGGHKRSH LISGSEAKNR ATIQIQKQVP EIRRFLDLNL PPEPVEIDNK NHNLASLKHP  480
WWAAANEHKH EALVNVGFHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	353	KKPKKRSKFECDICNKIFHSYQALGGHRASHKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	7e-31	C2H2 family protein