PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022985482.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 500aa MW: 53636.1 Da PI: 9.0273

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022985482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_022985482.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.8	0.00037	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022985482.1 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQESARH PPSIGRHLYG AQDHPNIINQ SAPGHFTHLL PSSMGSSFRP 180 MSASGFFLTE QNNQSSFHDD QPNQSQQGFF GNKGFHGVMQ FPEIQSHTNN CATNVFNLGF 240 IPNSTADGTT NLNNNNDTNS NSTNLNQFSA TNNGNNEAAA SNIFAVIGDQ MSSAALPSLY 300 SNALGVGGGG GSGIGGSFPH MSATALLQKA AQLGSTTSSS NTTSTLLRSF GSSSNSGGKA 360 SDRTLFPLSY GGVTFGEHES NLQDMMNSFE SGSSGSGMFG SGMNSFGGLE CSSSRSNMET 420 LEDPKLQQDV RGVRMGGTDR LTRDFLGVGQ IVRRMSGGGG GGGGGGYSQK QGAEGIVLEG 480 NERNSAPSSQ GFGGGNGNYQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK DPKRKVYLCP EPTCVHHHPS  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PPSIGRHLYG AQDHPNIINQ SAPGHFTHLL PSSMGSSFRP  180
MSASGFFLTE QNNQSSFHDD QPNQSQQGFF GNKGFHGVMQ FPEIQSHTNN CATNVFNLGF  240
IPNSTADGTT NLNNNNDTNS NSTNLNQFSA TNNGNNEAAA SNIFAVIGDQ MSSAALPSLY  300
SNALGVGGGG GSGIGGSFPH MSATALLQKA AQLGSTTSSS NTTSTLLRSF GSSSNSGGKA  360
SDRTLFPLSY GGVTFGEHES NLQDMMNSFE SGSSGSGMFG SGMNSFGGLE CSSSRSNMET  420
LEDPKLQQDV RGVRMGGTDR LTRDFLGVGQ IVRRMSGGGG GGGGGGYSQK QGAEGIVLEG  480
NERNSAPSSQ GFGGGNGNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-113	C2H2 family protein