PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022980616.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 455aa MW: 50532.6 Da PI: 8.7892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022980616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022980616.1 80 FVCEICSKGFQRDQNLQLHKRGH 102 89******************988 PP
2	zf-C2H2	12.9	0.00033	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022980616.1 157 WKCDKCSKRYAVQSDWKAHSKTC 179 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MNKGFASPME DTMSNLTSAS GEPSACSGNR SDQLPANYSG QYFSTPPPPP KKKRNLPGNP 60 DPDAEVVALS PKTLMATNRF VCEICSKGFQ RDQNLQLHKR GHNLPWKLKQ RANKEVIRKK 120 VYVCPETSCV HHDPLRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITTSN PNNNQNLPIS SSISHLNFQN 240 PLDINSFSLK KEHQQIPTTN NFNIPPWIGC PSSRSSPLHD HQSLIMINND HDQIMNPNNP 300 LHLIPSSSPS PHMSATALLQ KAAQMGATMS NSNNNGNMSS SSSSRDNHHQ ILMAGSEGVG 360 LPHALPLHTN KSNNYNDFEG PCFELERFGG GFEKDEIFRG RSDEGLSTRD FLGLRPISHT 420 EFLNNIAAVG YSNCINGGSP QTPRTQFHNQ PGWQG

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MNKGFASPME DTMSNLTSAS GEPSACSGNR SDQLPANYSG QYFSTPPPPP KKKRNLPGNP  60
DPDAEVVALS PKTLMATNRF VCEICSKGFQ RDQNLQLHKR GHNLPWKLKQ RANKEVIRKK  120
VYVCPETSCV HHDPLRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITTSN PNNNQNLPIS SSISHLNFQN  240
PLDINSFSLK KEHQQIPTTN NFNIPPWIGC PSSRSSPLHD HQSLIMINND HDQIMNPNNP  300
LHLIPSSSPS PHMSATALLQ KAAQMGATMS NSNNNGNMSS SSSSRDNHHQ ILMAGSEGVG  360
LPHALPLHTN KSNNYNDFEG PCFELERFGG GFEKDEIFRG RSDEGLSTRD FLGLRPISHT  420
EFLNNIAAVG YSNCINGGSP QTPRTQFHNQ PGWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	120	KLKQRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein