PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022979717.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 806aa MW: 90631.6 Da PI: 7.975

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022979717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.2	8.3e-37	132	207	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_022979717.1 132 RCQVPGCEVDISELKGYHRRHRVCLRCANATAVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 207 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence
MDNSPPSPLP QPLHDGAGMN LQLPMPDVSS TPLWDLGDLL DLAADDQFSF SLEQDNLPSA 60 SSHYLEIQSQ TSLPFNSDRI RKRDPRLTCS NFLAGRVPCA CPEIDAMLEE EAAATPGKKR 120 ARTARATAGI VRCQVPGCEV DISELKGYHR RHRVCLRCAN ATAVVLDGET KRYCQQCGKF 180 HVLSDFDEGK RSCRRKLERH NNRRRRKLVD SAASIESDRS GVPVEYVSCD GDVGKDNILF 240 NNQTDQKEVV HLEPEHGLVT STVCSAPDLQ NMDDRLTLLA MGEAQVDGGK DNSKSLTSSY 300 CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCIILTA 360 FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGNMLVY LNNMIFRPVE GKSVIKIERD 420 MQAPRLHYIH PTCFEAGKPM EFVACGSHLR QPKFRSLVSF AGKYLSHNHS FVLSHCQKEG 480 DDAKWSDHQL VKIYIPHTDH DLFGPAFVEV ENHSGLSNFI PILIGDSETC SEMKTIQERL 540 DMSLLVEATG SSHESCEHSS LRQKVHSELM MDISWLLKKP SSEHVQHIMN SSQIQRFTRL 600 LKFLIRNDST VILGRVLEHL KIVMENVESN VAVNGFSYPD LRFFEKYLDS ARDVLQLNLH 660 KTGNSVLHFG HPKSKGDRVS QSCSENKLVS VVPGIILKME SRENGHFRTV TGSTSIGSVE 720 TVPLLNKNLG KKITVQAFTV KEESRKQEHS RKSCGLLFSG AHFRRQTTLF AVTFVAVCFG 780 ICAALVHSHK VGDFAVSIRR CLIDKL

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence

MDNSPPSPLP QPLHDGAGMN LQLPMPDVSS TPLWDLGDLL DLAADDQFSF SLEQDNLPSA  60
SSHYLEIQSQ TSLPFNSDRI RKRDPRLTCS NFLAGRVPCA CPEIDAMLEE EAAATPGKKR  120
ARTARATAGI VRCQVPGCEV DISELKGYHR RHRVCLRCAN ATAVVLDGET KRYCQQCGKF  180
HVLSDFDEGK RSCRRKLERH NNRRRRKLVD SAASIESDRS GVPVEYVSCD GDVGKDNILF  240
NNQTDQKEVV HLEPEHGLVT STVCSAPDLQ NMDDRLTLLA MGEAQVDGGK DNSKSLTSSY  300
CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCIILTA  360
FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGNMLVY LNNMIFRPVE GKSVIKIERD  420
MQAPRLHYIH PTCFEAGKPM EFVACGSHLR QPKFRSLVSF AGKYLSHNHS FVLSHCQKEG  480
DDAKWSDHQL VKIYIPHTDH DLFGPAFVEV ENHSGLSNFI PILIGDSETC SEMKTIQERL  540
DMSLLVEATG SSHESCEHSS LRQKVHSELM MDISWLLKKP SSEHVQHIMN SSQIQRFTRL  600
LKFLIRNDST VILGRVLEHL KIVMENVESN VAVNGFSYPD LRFFEKYLDS ARDVLQLNLH  660
KTGNSVLHFG HPKSKGDRVS QSCSENKLVS VVPGIILKME SRENGHFRTV TGSTSIGSVE  720
TVPLLNKNLG KKITVQAFTV KEESRKQEHS RKSCGLLFSG AHFRRQTTLF AVTFVAVCFG  780
ICAALVHSHK VGDFAVSIRR CLIDKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	206	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein