PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022979270.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 368aa MW: 41811.1 Da PI: 6.0854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022979270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H XP_022979270.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.6	0.0002	237	259	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_022979270.1 237 YKCETCNKVFRSYQALGGHRASH 259 9***********99999998887 PP
3	zf-C2H2	11.4	0.001	289	311	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H XP_022979270.1 289 HECPVCFRVFSSGQALGGHKRSH 311 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDRHKCKLCF RSFSNGRALG GHMRSHLMNL PLPPKPEDPP PQHAHLSEDA DSASFLSSPS 60 SSEGDAEEKG LGYGLRENPK RSIRVVDPEF SFAVDAGSVV LQDRESETES SKNPTRRRSK 120 RTRKLDHHHH QHVHEHHHYS AFKRLQEKKV NQPESWTEAE PVSSISGSTT EQDVAFWLMM 180 LSRDKWTKQR GGYEEEEEEE EEEDNEDEED EEVEESMEET DDSEALKFPK NRNRGNYKCE 240 TCNKVFRSYQ ALGGHRASHK KIKLSVTYNN PQLVIHRENA ASMGERKIHE CPVCFRVFSS 300 GQALGGHKRS HVTAYSSPNS IPPKTPPPKK LGDSFIDLNL PAPFEEDDVS QIELSAVSDA 360 DFVNAIRQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDRHKCKLCF RSFSNGRALG GHMRSHLMNL PLPPKPEDPP PQHAHLSEDA DSASFLSSPS  60
SSEGDAEEKG LGYGLRENPK RSIRVVDPEF SFAVDAGSVV LQDRESETES SKNPTRRRSK  120
RTRKLDHHHH QHVHEHHHYS AFKRLQEKKV NQPESWTEAE PVSSISGSTT EQDVAFWLMM  180
LSRDKWTKQR GGYEEEEEEE EEEDNEDEED EEVEESMEET DDSEALKFPK NRNRGNYKCE  240
TCNKVFRSYQ ALGGHRASHK KIKLSVTYNN PQLVIHRENA ASMGERKIHE CPVCFRVFSS  300
GQALGGHKRS HVTAYSSPNS IPPKTPPPKK LGDSFIDLNL PAPFEEDDVS QIELSAVSDA  360
DFVNAIRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-59	C2H2 family protein