PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022978489.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family YABBY
Protein Properties Length: 178aa    MW: 19479.1 Da    PI: 8.5854
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022978489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY143.42.4e-44101581163
           YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                     +d+++  +++Cyv+CnfCnt+lav +P   l+++vtv+CG C++l  ++     q +   +h          + l ++ +   sn++++ ++ +s
  XP_022978489.1  10 MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTIPPLQGQCI-DH----------HPLTFQPQVGFSNDTRKGASISS 93 
                     5788999************************************9865444444333333.33..........23444444445555555555555 PP

           YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     +ss   s++  +e p +  v++PPek+ r Psayn+f+keeiqrika+nP+i hreafsaaaknWa +
  XP_022978489.1  94 TSS---SSSMPNEPPSPSFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 158
                     555...4455556677677***********************************************76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MGSSEDKSSM DLVQPNDHLC YVKCNFCNTL LAVGIPCRRL LETVTVKCGN CSNLSFLSTI  60
PPLQGQCIDH HPLTFQPQVG FSNDTRKGAS ISSTSSSSSM PNEPPSPSFV VKPPEKKHRL  120
PSAYNCFMKE EIQRIKAANP EIPHREAFSA AAKNWARYIP NSAAGSVSGT PNDVRKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-62YABBY family protein