PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022978439.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 619aa    MW: 67651.1 Da    PI: 4.608
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022978439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.21.2e-1092426192374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++  +a ++L +l+e +s++gdp++R+a+yf+eAL +rl+  ++++        + e++s++ + ++k++++++P+ kf+hl
  XP_022978439.1 242 LKTLIECAR-LSESEPDRAAQMLIQLKESSSEHGDPTERVAFYFLEALCRRLSLRSENCL------VSCESTSDDFTLSYKALNDACPYSKFAHL 329
                     689******.56668899999********************************9444433......333334899******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle +e+++r+HiiDf+isqG+QW+aLlqaLa+R+ g+p  +Ri g+ +p  g   +++l +tg+rLa+fA+ l+++fef++ + + +e+
  XP_022978439.1 330 TANQAILEITENASRIHIIDFGISQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGncPATALFATGNRLAEFAKLLELNFEFDP-ILTPIEE 423
                     ****************************************776659********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++r++++E+laVn++lql++llde+        +vLkl ksl+Pk+v++ e ea++n+  F++rf +al+yysa+f+sl+ klpr+s+er 
  XP_022978439.1 424 LNESSFRIESDESLAVNFMLQLYNLLDETPRAVL---NVLKLAKSLNPKIVTLGEYEASLNRVGFFTRFNNALRYYSAMFESLDPKLPRDSNERL 515
                     **************************99998888...9********************************************************* PP

            GRAS 284 kvErellgreivnvv...........acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdr 365
                      +E+ +lgr+i  vv           a++g  ++er+e++e+W++ +e++GF++v+ls++a +qak ll k++ s +y + e+s+ ++ l Wkd 
  XP_022978439.1 516 QLEKLVLGRRIGGVVgpesssstgaaAAAGGGKTERMEEKEEWKMLMENSGFEAVNLSHYARSQAKILLWKYDySSEYCLMESSAGFLsLAWKDV 610
                     **************93333333332233344579***************************************9999*99999887777****** PP

            GRAS 366 pLvsvSaWr 374
                     p+++vS+Wr
  XP_022978439.1 611 PIITVSSWR 619
                     ********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MANMCADSGN LMAIAQQVMK QKQLQEQQQQ QHPQQSPQQL TGPCTFGLNP WTASNHSLSG  60
APDLGFGLSG AGFPDPFQVQ RVVDGGDTSF QFPNLEHHSS AFRFTDFDGG AAAEFDSDEW  120
MDSLIVGGDS TESSNLPSGC EAWQSNSDFA FYGADPFIPC PSRLTIPCSS PSDLNRVIFP  180
DPPKSQTAVQ PPVVSWTGLT SATPPAVVKD TQVPNPPLIV HKSDDNGGSS SSAKTESTPP  240
LLKTLIECAR LSESEPDRAA QMLIQLKESS SEHGDPTERV AFYFLEALCR RLSLRSENCL  300
VSCESTSDDF TLSYKALNDA CPYSKFAHLT ANQAILEITE NASRIHIIDF GISQGVQWAA  360
LLQALATRST GKPTGIRISG IPAPMLGNCP ATALFATGNR LAEFAKLLEL NFEFDPILTP  420
IEELNESSFR IESDESLAVN FMLQLYNLLD ETPRAVLNVL KLAKSLNPKI VTLGEYEASL  480
NRVGFFTRFN NALRYYSAMF ESLDPKLPRD SNERLQLEKL VLGRRIGGVV GPESSSSTGA  540
AAAAGGGKTE RMEEKEEWKM LMENSGFEAV NLSHYARSQA KILLWKYDYS SEYCLMESSA  600
GFLSLAWKDV PIITVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein