PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022978088.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 851aa    MW: 92392.8 Da    PI: 6.7503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022978088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.95.3e-1294668252374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alpps  ++++s++ ++a+++f+ +sP++kfsh+
  XP_022978088.1 466 LTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLMPHTHSQKIASAFQVFNGISPFVKFSHF 560
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s++ le+tg+rL++fAe+lg+pf+f + va+++ +l++
  XP_022978088.1 561 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQQVLEATGKRLTEFAEKLGLPFDFFP-VADKIGNLDF 650
                     *****************************************************....99*************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer+ vE
  XP_022978088.1 651 ERLNVSKREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVE 738
                     ****************9..999988888888....**********************.889********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r+ + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaW+
  XP_022978088.1 739 QQLLSREIRNVLAVGGPSRTGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDHGTLKLGWKDLCLLTASAWK 825
                     ******************988887.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MAAYALLGDS TGRVNGGFDD SPLTSASTNS NGSEERNHQQ TVQVQVIQSR KMVRKRIASE  60
MEIDGGGVTA SVHSRLSRRS LGSDRPFACG EIKGNVNYCS SSNPSHGGNH STVHNLTALT  120
SGVIEGTNLS NPPSASDATA SSTTSNNNNN NNATLLDSTL PVLRPQPHHH LQNPAVCGFS  180
GLPLFPPESN HHHKLNTRSN PFPLPNPSQI LLHNPPTTAT TSIIAAASSP MDDSSATAWI  240
DGIIKDLIHS STAISIPQLI QNVREIIYPC NPNLANLLEF RLRTLTEPSV PNFVAEDHRL  300
RKSTLPVAAL GLQQRQFNQE QHEQEHDCSG LKLNLDSSSL HNFPTFPSQP PFHEPYLHWG  360
ATTPPVPTPS GDDVLQRLPG HHQLNLSSVT PSSLVSLNHV PSKPQSEHQN SCPVNVKAAV  420
AQPAPAAAAA AAPQPSNNPS ATALLIREIK EEMRQQKRDE EGLHLLTLLL QCAEAVSADN  480
LEEANKMLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGIYAALPP SLMPHTHSQK  540
IASAFQVFNG ISPFVKFSHF TANQAIQEAF EREERVHIID LDIMQGLQWP GLFHILASRP  600
GGPPYVRLTG LGTSQQVLEA TGKRLTEFAE KLGLPFDFFP VADKIGNLDF ERLNVSKREA  660
VAVHWMQHSL YEVTGSDSNT LWLLQRLAPK VVTVVEQDLS HTGSFLGRFV EAIHYYSALF  720
DSLGVSYGEE SEERHLVEQQ LLSREIRNVL AVGGPSRTGE VKFQNWREKL QQSGFKGISL  780
AGNAATQATL LLGMFPSDGY TLVEDHGTLK LGWKDLCLLT ASAWKPPFHH HAAAAAAAAA  840
PATNNNHIPR T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein