PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022969710.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 386aa MW: 41813.7 Da PI: 9.1081

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022969710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022969710.1 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	16.6	2.2e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+Lk H++t+ XP_022969710.1 144 WKCEKCSKKYAVHSDLKAHLKTC 166 58*******************98 PP
3	zf-C2H2	11.4	0.001	174	192	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + XP_022969710.1 174 DCGTVFSRRDSFITHREYC 192 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MSKTSGCSDD GGSLSLENQL SHGSSQPHQQ PQLSVPKKKR NLPGTPDPDA EVVALSPGTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSG SDTRRRRVYV CPETSCVHHN 120 PARALGDLTG IKKHFSRKHG EKNWKCEKCS KKYAVHSDLK AHLKTCGSKE YKCDCGTVFS 180 RRDSFITHRE YCDALTEESN KLAGRGATMA ASPPITLPHH DLMPIPPKPF NLSAGSMFSS 240 SISNDHHFPS SSSAALMSAT ALLQKAAQMG AAVSSPIIQQ KNGLVTTMAP SSFGGMLPTT 300 CLQKCPQENI GGGVDMGMID DILMLNGMFD KPIGEGARKT MTLDLLGAEG GKGRKFQAEE 360 SVGFGGVMEN VGYFCHQGAM GKQGHM

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MSKTSGCSDD GGSLSLENQL SHGSSQPHQQ PQLSVPKKKR NLPGTPDPDA EVVALSPGTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSG SDTRRRRVYV CPETSCVHHN  120
PARALGDLTG IKKHFSRKHG EKNWKCEKCS KKYAVHSDLK AHLKTCGSKE YKCDCGTVFS  180
RRDSFITHRE YCDALTEESN KLAGRGATMA ASPPITLPHH DLMPIPPKPF NLSAGSMFSS  240
SISNDHHFPS SSSAALMSAT ALLQKAAQMG AAVSSPIIQQ KNGLVTTMAP SSFGGMLPTT  300
CLQKCPQENI GGGVDMGMID DILMLNGMFD KPIGEGARKT MTLDLLGAEG GKGRKFQAEE  360
SVGFGGVMEN VGYFCHQGAM GKQGHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-100	C2H2 family protein