PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022968562.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 397aa MW: 44911.4 Da PI: 7.1674

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022968562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.3	4.2e-28	125	210	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW++vs+ m e g++rs k+Ckek++nl k+ykk+keg+ +r+ + +++++f+qlea XP_022968562.1 125 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDQVSRMMdVEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 210 8***********************************99**************************985..5557*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MSDKYTYPDL RQLTADKPIF PATPQTLDSF FPHHTHLTRG FSPAPPPPPP PLPKFPPLQL 60 LLPDPAVLPD GLFQFGCSNT STAAGGATPS AAVSAPFYRR NKMMDSEWCP YGNDVVGGSN 120 GANSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR MMDVEYGYKR SGKKCKEKFD 180 NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGGCNDQLS SPTVVESNIY GTSAVEAGEA 240 GINNNNGNEK ALVGGTSLSF SISSDFETSS SGNYHDDDLS AIAFMMNQRR VEKAREDDKS 300 KGDGGRGGRW REEVEKMLDS KLSRLMEVQE NWMEKIMASV EDGEKERILK EEEWRKKEVA 360 KFDHEMNEFC ARERAWIEAR EAALMEIMKR FGGKGYD

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MSDKYTYPDL RQLTADKPIF PATPQTLDSF FPHHTHLTRG FSPAPPPPPP PLPKFPPLQL  60
LLPDPAVLPD GLFQFGCSNT STAAGGATPS AAVSAPFYRR NKMMDSEWCP YGNDVVGGSN  120
GANSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR MMDVEYGYKR SGKKCKEKFD  180
NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGGCNDQLS SPTVVESNIY GTSAVEAGEA  240
GINNNNGNEK ALVGGTSLSF SISSDFETSS SGNYHDDDLS AIAFMMNQRR VEKAREDDKS  300
KGDGGRGGRW REEVEKMLDS KLSRLMEVQE NWMEKIMASV EDGEKERILK EEEWRKKEVA  360
KFDHEMNEFC ARERAWIEAR EAALMEIMKR FGGKGYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	KRSGKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-39	Trihelix family protein