PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022967062.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 627aa MW: 66725.1 Da PI: 9.4955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022967062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_022967062.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.4	0.00048	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022967062.1 147 WKCDKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MAASSSSVPL FGPRDEAQMR QQQQQQQQQL QQSNSSGVPP PKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEPKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPTNLG SAMGGHLYGG NSNVGLTLSQ VPQISSLQDI 240 PNITQSDVLR LGGGGRTGQF NHLLPPSIGS SFRPPPQQAM PSSAAAAAFF LNDQTSQNSF 300 HEDHGSQSQQ GLFGNKAFHG LMQFSDMQSH TSNSNNPSSN LFNLGFISNP TGDSTTNMNN 360 NNTNNSNNTS NSNNNSNSNS NNNNLQSSLL NQFSGTNNGN NEGGASNIFS MMGDQMNSGA 420 VPSLYSNTTG VGGSGTSGAI PHMSATALLQ KAAQLGSTTS SSNTTATLLR SFGSSSTSGG 480 KASDRTLFPP SYGGVFGENE SNLQDLMNSF TTGSSAGGLF GGGMSSFGTF DGGNNRPNNM 540 ETLEDPKLQQ NLSSVSMGGT DRLTRDFLGV GQIVRSMSSG GGGGGSGGGY SQREHKQPPQ 600 GIVMDGNESN SAATSQAFGG GGNGNYQ

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MAASSSSVPL FGPRDEAQMR QQQQQQQQQL QQSNSSGVPP PKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSNKEPKRK VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPTNLG SAMGGHLYGG NSNVGLTLSQ VPQISSLQDI  240
PNITQSDVLR LGGGGRTGQF NHLLPPSIGS SFRPPPQQAM PSSAAAAAFF LNDQTSQNSF  300
HEDHGSQSQQ GLFGNKAFHG LMQFSDMQSH TSNSNNPSSN LFNLGFISNP TGDSTTNMNN  360
NNTNNSNNTS NSNNNSNSNS NNNNLQSSLL NQFSGTNNGN NEGGASNIFS MMGDQMNSGA  420
VPSLYSNTTG VGGSGTSGAI PHMSATALLQ KAAQLGSTTS SSNTTATLLR SFGSSSTSGG  480
KASDRTLFPP SYGGVFGENE SNLQDLMNSF TTGSSAGGLF GGGMSSFGTF DGGNNRPNNM  540
ETLEDPKLQQ NLSSVSMGGT DRLTRDFLGV GQIVRSMSSG GGGGGSGGGY SQREHKQPPQ  600
GIVMDGNESN SAATSQAFGG GGNGNYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.1	1e-119	C2H2 family protein