PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022966712.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 467aa    MW: 52458.1 Da    PI: 5.2638
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022966712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.73.8e-137454611373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++    ++ ee+ a++lf+e++P+lk+++
  XP_022966712.1  45 LIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIL--SVPEEILAQRLFFELCPFLKLAY 137
                     689*************************************************************988887..59********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege+++HiiDf   +++QW++Llq+L +Rp+gpp++RiTg+++    +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+
  XP_022966712.1 138 VITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHVRITGIHE----QKEVLEQMAVRLTEEAEKWDIPFQFTP-VVSKLENLD 227
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.......................................................desvsleserdevLkl 230
                     le+Lrvk+gEalaV++vl+lh++l                                                       + s+    + +++L++
  XP_022966712.1 228 LESLRVKTGEALAVSSVLELHTILatdddktktspsasknlqkllrmkqrtlgewletdslqvfssspdsasvcspsglNPSQ----KMNSFLNA 318
                     *********************************************************************99999754444444....5566**** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     +++lsPkv+v++eqe+++n++ ++er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++acegaerrerhe+lekW  r+e++GF+
  XP_022966712.1 319 LWGLSPKVMVITEQESNLNGSGLMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGAERRERHEKLEKWIVRFESVGFG 413
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      v ls++ +   ++ll+  + dgy+++ee+g l+++W+drpL+svSaW
  XP_022966712.1 414 RVGLSYNSMFLGNRLLQSNGYDGYKIKEENGFLFICWQDRPLFSVSAW 461
                     ************************************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MFNGEGSSSV TSSPLQLFPW SLSPGIGSPY PFLRELKSEE RGLCLIHLLL ACANQVAIGN  60
IENANVGLEQ ISHLASPDGD TMQRIAAYFT EALADRILKS WPGLHKALNS TKILSVPEEI  120
LAQRLFFELC PFLKLAYVIT NQAIIEAMEG ERMIHIIDFK SCEPAQWINL LQTLKDRPDG  180
PPHVRITGIH EQKEVLEQMA VRLTEEAEKW DIPFQFTPVV SKLENLDLES LRVKTGEALA  240
VSSVLELHTI LATDDDKTKT SPSASKNLQK LLRMKQRTLG EWLETDSLQV FSSSPDSASV  300
CSPSGLNPSQ KMNSFLNALW GLSPKVMVIT EQESNLNGSG LMERVLEALN FYAALFDCLE  360
STVSRSSIER QRVEKMLLGE EIKNIIACEG AERRERHEKL EKWIVRFESV GFGRVGLSYN  420
SMFLGNRLLQ SNGYDGYKIK EENGFLFICW QDRPLFSVSA WGFQRQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein