PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022965963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 21179.9 Da PI: 8.6449 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196.1 | 1.6e-60 | 6 | 161 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +s+ eq+Cy+ CnfCn +lavsvP + l+ +vtvrCGhC++l svn+a a q l+ ++ ++ ++ + + + +l s + +++++t + XP_022965963.1 6 NSAQEQLCYIPCNFCNIVLAVSVPCSNLLDIVTVRCGHCSNLWSVNMAAAFQSLSWKNS--QASSHSHNGNAADYRVELGSSSKCNNKTKTRAPI 98 6789**********************************************999999886..2223333344444555555555555555555555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++ ++n+d+ v ++rPPek+qrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWah+P+i XP_022965963.1 99 QN-TTNDDQRV-----INRPPEKKQRVPSAYNKFIKEEIQRIKANNPDITHREAFSTAAKNWAHYPHIQ 161 44.34444444.....48*************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC SNLLDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WKNSQASSHS HNGNAADYRV ELGSSSKCNN KTKTRAPIQN TTNDDQRVIN RPPEKKQRVP 120 SAYNKFIKEE IQRIKANNPD ITHREAFSTA AKNWAHYPHI QCLMLEANNL KTPNDGSEKH 180 YMSVPGLHY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 3e-77 | YABBY family protein |